Blend chopped tomatoes, onions, garlic, and basil together and bring to a boil.
Add honey, salt, and pepper and let it simmer for 5-10 minutes on low heat.
Meanwhile, cut the vegetables into thin slices.
Spread the tomato sauce in a pan, a roasting dish, or similar, so it covers the bottom.
Place the slices alternately along the sides of the pan and work inward.
When the entire dish is filled, sprinkle with fresh thyme and cheese and bake at 200 degrees Celsius (392 degrees Fahrenheit) for about 25-30 minutes.